Supplementary Online Material to Scientific Publications Data sets (som)

Data sets compiled from supplementary online materials to scientific publications.

Available variables

heim-body - Body size, sampling completeness, and extinction risk in the marine fossil record

The dataset downloaded from here.

kiessling-coralgenera - Traits of coral genera

The dataset downloaded from here.

veizer-isotope - O18 and C13 Stable isotope data

zaffos-fragment - Continent Fragmentation index of Zaffos et al. 2017

The dataset downloaded from here.

Heim - body

A data set comprising the body sizes, stratigraphic ranges, and occurrence patterns of 9408 genera of fossil marine animals spanning eight Linnaean classes across the past 485 Myr.

Access the body size, sampling completeness, and extinction risk in the marine fossil record variable (“heim-body”) of the “som” dataset with a fetch() function:

 body <- fetch("som", "heim-body")

Additional arguments

The argument dir represents the path to temporary directory.

The argument verbose (logical) determines should feedback be output to the console?

body <- fetch(dat = "som", var = "heim-body", dir, verbose=FALSE)

Resolution

none

Archive size

som_heim-body_2019-12-11_v2: 1.08 MB

Version

2019-12-11_v2

Licence

CC0 1.0

Kiessling coral genera

Traits of coral genera.

Access the traits of coral genera variable (“kiessling-coralgenera”) of the “som” dataset with a fetch() function:

 coral <- fetch("som", "kiessling-coralgenera")

Resolution

none

Archive size

som_kiessling-coralgenera_0.53

Version

0.54

Licence

CC-BY

Veizer isotope

A compilation of 18O measurements for 58,532 low-Mg calcite marine shells that cover almost the entire Phanerozoic eon.

Access the O18 and C13 Stable isotope data variable (“veizer-isotope”) of the “som” dataset with a fetch() function:

 isotope <- fetch("som", "veizer-isotope")

Additional arguments

The argument dir represents the path to temporary directory.

The argument verbose (logical) determines should feedback be output to the console?

The argument detrend (logical) should the dataset be detrended as they suggest it in their paper?

body <- fetch(dat = "som", var = "veizer-isotope", dir, verbose=FALSE, detrend = FALSE)

Resolution

none

Archive size

som_veizer-isotope_2015-onelist: 4.12 MB

Version

2015-onelist

Licence

Not specified

Zaffos fragment

A global database of marine animal fossil occurrences and a paleogeographic reconstruction model.

Access the continent fragmentation index variable (“zaffos-fragment”) of the “som” dataset with a fetch() function:

 frag <- fetch("som", "zaffos-fragment")

Additional arguments

The argument dir represents the path to temporary directory.

The argument verbose (logical) determines should feedback be output to the console?

body <- fetch(dat = "som", var = "zaffos-fragment", dir, verbose=FALSE)

Resolution

none

Archive size

som_zaffos-fragment_zaffos_et_al_2017:19.4 KB

Version

zaffos_et_al_2017

Licence

Not specified

References

Payne, J. L., & Heim, N. A. (undefined/ed). Body size, sampling completeness, and extinction risk in the marine fossil record. Paleobiology, 1-18. doi.org/10.1017/pab.2019.43

Kiessling, W., & Kocsis, Adam. T. (2015). Biodiversity dynamics and environmental occupancy of fossil azooxanthellate and zooxanthellate scleractinian corals. Paleobiology, 41(3), 402-414.

Veizer, J., & Prokoph, A. (2015). Temperatures and oxygen isotopic composition of Phanerozoic oceans. Earth-Science Reviews, 146, 92-104. doi.org/10.1016/j.earscirev.2015.03.008

Zaffos, A., Finnegan, S., & Peters, S. E. (2017). Plate tectonic regulation of global marine animal diversity. Proceedings of the National Academy of Sciences, 114(22), 5653-5658. doi.org/10.1073/pnas.1702297114